PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g16260.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 176aa    MW: 20803.8 Da    PI: 7.8092
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g16260.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.71e-3481022102
                      HHHHHHHHHC...TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeile...deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                      Fl k+y++le   +e++++++sw+e+g+ fvv+ + ef+++ Lp+yFkh+nf+SF+RQLn+YgFkk+++++         weFkh++F++g ++
  Vradi07g16260.1   8 FLLKTYDLLEegeSEDMTRIVSWNEEGSGFVVWSPAEFSEHTLPRYFKHNNFSSFIRQLNTYGFKKMSSKR---------WEFKHEKFQRGCRH 92 
                      9********977778999**************************************************999.........************** PP

                      XXXXXXXXXX CS
     HSF_DNA-bind  93 llekikrkks 102
                      +l +i rkk 
  Vradi07g16260.1  93 MLGEITRKKC 102
                      *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.5E-424100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-35594IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-285100IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.1E-12831IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-308100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-124961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-126274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MNRCPAPFLL KTYDLLEEGE SEDMTRIVSW NEEGSGFVVW SPAEFSEHTL PRYFKHNNFS  60
SFIRQLNTYG FKKMSSKRWE FKHEKFQRGC RHMLGEITRK KCEPSVFPAY LKSSSEENAT  120
EENNQQLLME ENKNLKKERL ELQMQIEECK ALEIKLLACL SQFMDTQQTK IRRLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A7e-1741004106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A7e-1741004106HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g16260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-141AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506614.11e-127heat stress transcription factor B-2a
TrEMBLA0A1S3UKY91e-126A0A1S3UKY9_VIGRR; heat stress transcription factor B-2a
STRINGGLYMA01G34490.11e-107(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-37heat shock factor 4