PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g16460.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Dof
Protein Properties Length: 225aa    MW: 24117.7 Da    PI: 9.2938
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g16460.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.48.5e-401171262
           zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                     +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ +
  Vradi07g16460.1 11 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRIK 71
                     7899******************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027014.0E-341369IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-271469IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.5251569IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101753IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDTASHLLHQ QQQALKCPRC DSSNTKFCYY NNYSLSQPRH FCKACKRYWT RGGTLRNVPV  60
GGGCRKNKRI KRPNGDASPP SSSTPTSNSN PPSLPHIPST STANHVSVNP LFYGLPNTNK  120
FIGAAGVKGD HGGNGFQGLA PLQGLQMEGS NNISSKEVKA EGPNRLELEW SNSNNNNNGG  180
GGACQNQMEH VGLSDPNSLY WNTATSLSAW SDQPNFGPSV TSLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g16460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-158AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027920737.18e-69dof zinc finger protein DOF1.4-like isoform X1
RefseqXP_027920738.17e-69dof zinc finger protein DOF3.1-like isoform X2
TrEMBLA0A4D6L7B82e-67A0A4D6L7B8_VIGUN; Uncharacterized protein
STRINGXP_007159343.12e-51(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45223356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.12e-39Dof family protein