PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g17900.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 210aa    MW: 23642 Da    PI: 9.7847
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g17900.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.2e-164696155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++y GVr+++ +grW AeI+d s   ++ r +lg+f+ aeeAa a++ a++ l+g
  Vradi07g17900.1 46 KKYLGVRQRP-SGRWIAEIKDSS---QKLRLWLGTFDKAEEAAFAYDSAARLLRG 96
                     5899******.7*********42...36***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.72E-3146105No hitNo description
SMARTSM003802.8E-3147110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-2847105IPR001471AP2/ERF domain
PROSITE profilePS5103220.15247104IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-1947104IPR016177DNA-binding domain
PfamPF008471.9E-94796IPR001471AP2/ERF domain
PRINTSPR003673.1E-74859IPR001471AP2/ERF domain
PRINTSPR003673.1E-77086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MYAKNTLMEN IESSELSQQS QNPIEIDKPY EKRVMKIEKV GKKIEKKYLG VRQRPSGRWI  60
AEIKDSSQKL RLWLGTFDKA EEAAFAYDSA ARLLRGRNAK TNFPNPGIIN NHQQDYTILG  120
KNPRSYQLLK HAAMKNHALS PSLYSTFMPT WKNQIMMRDQ HHTLVEETIV CSIPQQGSAC  180
CGISFGSSKV YSSVVVAPSF SVSSHDETA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1546104160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A6e-15471051473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g17900.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506640.21e-158ethylene-responsive transcription factor CRF1
TrEMBLA0A1S3UKT31e-156A0A1S3UKT3_VIGRR; ethylene-responsive transcription factor CRF1
STRINGXP_007155177.11e-114(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.19e-18related to AP2 11