PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g19120.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 110aa    MW: 12381.4 Da    PI: 10.3797
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g19120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA42.68.4e-14632935
             GATA  9 TplWRrgpdgnktLCnaCGlyyrkkgl 35
                     TplWR+gp+ ++ LCnaCG +y+k+g+
  Vradi07g19120.1  6 TPLWRNGPEDKPVLCNACGSRYKKRGS 32
                     ********88888************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501148.55131IPR000679Zinc finger, GATA-type
SMARTSM004010.0032354IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-10432IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.09E-7533No hitNo description
CDDcd002027.36E-10650No hitNo description
PfamPF003202.7E-11632IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MVSSVTPLWR NGPEDKPVLC NACGSRYKKR GSLAEKSGRL WSTKIPTKKR SEVVYKEITP  60
LERFYIRLLK MSKNHRNTNE TSSEEVLLLN NANNFIPSTE IGIGCVILK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g19120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-114AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027920403.13e-64GATA transcription factor 27-like
TrEMBLV7CN031e-54V7CN03_PHAVU; Uncharacterized protein
STRINGXP_007159598.12e-55(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127471024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.18e-12GATA transcription factor 27