PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi07g19440.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HB-other

Protein Properties

Length: 198aa MW: 22885.9 Da PI: 9.378

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi07g19440.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56	6.9e-18	107	159	4	52
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrR 52 ++t+eq+e+Le++++++++ps ++r++L + + +++++q+kvWFqNrR Vradi07g19440.1 107 YVRYTPEQVEALERVYAECPKPSSSRRQQLIRDCpilsNIEQKQIKVWFQNRR 159 6789************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	3.3E-11	103	169	IPR001356	Homeobox domain
CDD	cd00086	7.48E-14	106	159	No hit	No description
SuperFamily	SSF46689	1.97E-14	106	160	IPR009057	Homeodomain-like
Pfam	PF00046	1.5E-15	107	159	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-16	109	159	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.556	109	165	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MKTKHWPKKE KSQNSRKEIK EKEERKKKGN HGYDTRTVRS GMGYGTHGYD TRTNGRAWLA 60 VDNLNGRTWE QHLMKECGGS LGEEGKEEED FKKRDSVLNR LMDCGKYVRY TPEQVEALER 120 VYAECPKPSS SRRQQLIRDC PILSNIEQKQ IKVWFQNRRP SHDVSVEGAL TECSNDHLAL 180 VLVLVMDKAK ESDSRFL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi07g19440.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-100	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34710.1	3e-31	HD-ZIP family protein