PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi07g21250.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 364aa MW: 38866.3 Da PI: 7.1097

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi07g21250.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.6e-12	178	223	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Vradi07g21250.1 178 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 223 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.36E-13	171	227	No hit	No description
SuperFamily	SSF47459	3.93E-17	171	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	173	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-16	175	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-9	178	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	179	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MQPCSREMQG ANNNSLFNNG GNNQQQIHFD ATSNEDFLKQ MLSNLPSSSP WTLDPKHNPL 60 WDPNSDETTP ENNVVFPYDL EQANLASKFR NHQITDDKAS ALMLQHHHQL LLSSAAANSP 120 LLQMPVSSLN DVVHASSFKS PAPGQSFGAS APATGGGGGS GQPKQRIRAR RGQATDPHSI 180 AERLRRERIA ERMKALQELV PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAAAV 240 APLVADISSE GGADCVQPKR NNTNGNSNGN HASSNDTLTT TEQQVAKLME EDMGSAMQYL 300 QGKGLCLMPI SLATAISKAT CHTRNPFTNN ADGPSSPGIS ALTLHSSTLS NGLVKDTASV 360 SKS*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MQPCSREMQG ANNNSLFNNG GNNQQQIHFD ATSNEDFLKQ MLSNLPSSSP WTLDPKHNPL  60
WDPNSDETTP ENNVVFPYDL EQANLASKFR NHQITDDKAS ALMLQHHHQL LLSSAAANSP  120
LLQMPVSSLN DVVHASSFKS PAPGQSFGAS APATGGGGGS GQPKQRIRAR RGQATDPHSI  180
AERLRRERIA ERMKALQELV PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAAAV  240
APLVADISSE GGADCVQPKR NNTNGNSNGN HASSNDTLTT TEQQVAKLME EDMGSAMQYL  300
QGKGLCLMPI SLATAISKAT CHTRNPFTNN ADGPSSPGIS ALTLHSSTLS NGLVKDTASV  360
SKS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	187	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi07g21250.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017418229.1	0.0	PREDICTED: transcription factor bHLH82-like isoform X2
Swissprot	Q9ZUG9	4e-84	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0S3R6B2	0.0	A0A0S3R6B2_PHAAN; Uncharacterized protein
STRING	XP_007154897.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4778	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-64	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]