PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g22620.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 241aa    MW: 27238.1 Da    PI: 5.448
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g22620.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.5e-145396755
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                       Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A+eYI++L+
  Vradi07g22620.1 53 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIEYIQHLH 96
                     57*********************66......*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-1846109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.4944695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-1349100No hitNo description
SMARTSM003531.8E-1552101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-1752109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-115395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDNMGGEYNH FWDTFFQNQE LDSWAMDEAA MSGYYDSSSP DGGASSMASK NIVSERNRRK  60
KLNERLFALR AVVPNISKMD KASIIKDAIE YIQHLHEQEK RIEAEILDLE SGKLKNPTYE  120
FEHDLPILLR SKKKRTEQLF DSATSRNSPI EVIELRVAYM GDKTFVVSLT CSKRIDTMVK  180
LCEVFESLKL KIIAANITSF SGTLLKTVFI EADEQEKDVL QIKIQTAISA LNGPQSPMSI  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-1451111969Transcription factor MYC2
5gnj_B9e-1451111969Transcription factor MYC2
5gnj_E9e-1451111969Transcription factor MYC2
5gnj_F9e-1451111969Transcription factor MYC2
5gnj_G9e-1451111969Transcription factor MYC2
5gnj_I9e-1451111969Transcription factor MYC2
5gnj_M9e-1451111969Transcription factor MYC2
5gnj_N9e-1451111969Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g22620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932130.0BT093213.1 Soybean clone JCVI-FLGm-17A23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507788.11e-179transcription factor bHLH35
SwissprotQ2HIV91e-89BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A1S3UNY91e-178A0A1S3UNY9_VIGRR; transcription factor bHLH35
STRINGXP_007154705.11e-138(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.15e-79bHLH family protein