PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g23260.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 201aa    MW: 22858.8 Da    PI: 6.6671
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g23260.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-172266147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+ T +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ 
  Vradi07g23260.1 22 RGNITSDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 66
                     7999******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.344116IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-11228IPR009057Homeodomain-like
SuperFamilySSF466895.43E-20373IPR009057Homeodomain-like
PROSITE profilePS5129424.3971771IPR017930Myb domain
SMARTSM007172.7E-152169IPR001005SANT/Myb domain
PfamPF002496.6E-152267IPR001005SANT/Myb domain
CDDcd001673.71E-122667No hitNo description
Gene3DG3DSA:1.10.10.606.8E-212967IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
LKRCGKSCRL RWLNYLRPDI KRGNITSDEE ELIIRLHNLL GNRWSLIAGR LPGRTDNEIK  60
NYWNTNLGKK VKENIANPKL DSHLVRTKAT KFTKLFFPHP SMLQHPNKSE EEEKVVAELT  120
TKNNGFLSFP DEEKQLSPDM LTDFNVGDIC LSDLLLDSDF TNICNNQQLF SSCSDQTSAS  180
NNLHSFISFL DTTEETPGQS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2037140108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g23260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150344e-69AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506712.11e-145transcription factor MYB8
TrEMBLA0A1S3UL121e-144A0A1S3UL12_VIGRR; transcription factor MYB8
STRINGXP_007154596.15e-96(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.13e-43MYB family protein