PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi07g24790.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

CAMTA

Protein Properties

Length: 928aa MW: 104987 Da PI: 7.0474

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi07g24790.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	55.3	1.3e-17	67	113	72	118
CG-1 72 kLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 +L vg+ e +++yYah+++n++f rrcywlL++++e+ivlvhy+e++ Vradi07g24790.1 67 QLSVGNEERIHVYYAHGQDNSNFVRRCYWLLDKSMEHIVLVHYRETQ 113 799*****************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	22.239	25	118	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.1E-25	28	113	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.4E-14	65	111	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	5.9E-4	370	460	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	9.2E-5	373	459	IPR002909	IPT domain
SuperFamily	SSF81296	4.48E-16	373	460	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	1.54E-18	554	673	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.9E-7	567	638	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	8.52E-16	567	668	No hit	No description
Gene3D	G3DSA:1.25.40.20	7.7E-17	567	672	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.937	576	668	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	8.2E-5	609	638	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	10.846	609	641	IPR002110	Ankyrin repeat
SMART	SM00248	940	648	677	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	3.45E-7	716	823	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	6.522	720	749	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	7.7	772	794	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.108	773	802	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.036	776	793	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0099	795	817	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.517	796	820	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.012	797	817	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	11	876	898	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.206	878	906	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 928 aa Download sequence Send to blast
MANNLAAQLV GSEIHGFHTL QDLDVRSILE EARTRWLRPN EIHAMLCNYK YFPINVKPVN 60 LPKSNYQLSV GNEERIHVYY AHGQDNSNFV RRCYWLLDKS MEHIVLVHYR ETQEMQGSPV 120 TPVNSHSSSV SDPPAPWVVL DEIDSGTTTT YAADTSDNVK DKSHELRLHE INTLEWDDLV 180 DANDHNASTM HNGGSVAYFN QQDEILLNGS FSNGEDKISS ILIFQYAARL PKLSYVDSGN 240 STPLAYLFCH QVVNNLSAEI SSFNCHPLPI AGSDSVTYNF SESATLQMMG NQANPNEQRN 300 NIVSLSAGSF DPLVSERLQS QDSFGMWVNH IMSDSPCSVD DPALESPVSS VHEPYLSPVV 360 DGQQISQPEQ VFTITDVSPT WVSSSEKSKV LVTGFFHKDY MHLSKSNLLC VCGDVSVPAE 420 IVQVGFYRCW VPPHSPGIVN LYLSLDGHKP ISQVVNFEYR TLVLHDPTAA MEENNNWDEF 480 RLQMRLAYLL FAKQLSLDVI SCKVPPNRLK EARQFALRTS FISNSWQYLI KSTEDNQIPF 540 SQAKDALFGI ALKNRLREWL FERIVLGYKT TEYDSHGQSV IHLCAILGYT WAVSLFSWSG 600 LSLDFRDRFG WTALHWAAYW GREKMVATLL SAGAKSNLVT DPTPKNPGGC TAADLAYMRG 660 HDGLAAYLSE KSLVQHFNDM SLAGNISGSL ETSTTDTVNS ARLTDDQQNM KDTLAAYRTA 720 ADAAARIQAA FREHNLKLRT NAVMSSNPEA EARKIVAAMK IQHAFRNFET KKMMGAAARI 780 QCTFRTWKIR KEFLLMRRQA VKIQAAFRCF QLRKHYRKIL WSVGVVEKAV LRWRLKRRGF 840 RGLQVRTIEV GNGDQDKESV AEEEFFKTGR KQAEERVERS VVRVQAMFRS KKAQEEYRRM 900 KVALDQAKLE REYEQLLSTE VDMELKA*

Sequence ? help Back to Top

Protein Sequence Length: 928 aa Download sequence Send to blast

MANNLAAQLV GSEIHGFHTL QDLDVRSILE EARTRWLRPN EIHAMLCNYK YFPINVKPVN  60
LPKSNYQLSV GNEERIHVYY AHGQDNSNFV RRCYWLLDKS MEHIVLVHYR ETQEMQGSPV  120
TPVNSHSSSV SDPPAPWVVL DEIDSGTTTT YAADTSDNVK DKSHELRLHE INTLEWDDLV  180
DANDHNASTM HNGGSVAYFN QQDEILLNGS FSNGEDKISS ILIFQYAARL PKLSYVDSGN  240
STPLAYLFCH QVVNNLSAEI SSFNCHPLPI AGSDSVTYNF SESATLQMMG NQANPNEQRN  300
NIVSLSAGSF DPLVSERLQS QDSFGMWVNH IMSDSPCSVD DPALESPVSS VHEPYLSPVV  360
DGQQISQPEQ VFTITDVSPT WVSSSEKSKV LVTGFFHKDY MHLSKSNLLC VCGDVSVPAE  420
IVQVGFYRCW VPPHSPGIVN LYLSLDGHKP ISQVVNFEYR TLVLHDPTAA MEENNNWDEF  480
RLQMRLAYLL FAKQLSLDVI SCKVPPNRLK EARQFALRTS FISNSWQYLI KSTEDNQIPF  540
SQAKDALFGI ALKNRLREWL FERIVLGYKT TEYDSHGQSV IHLCAILGYT WAVSLFSWSG  600
LSLDFRDRFG WTALHWAAYW GREKMVATLL SAGAKSNLVT DPTPKNPGGC TAADLAYMRG  660
HDGLAAYLSE KSLVQHFNDM SLAGNISGSL ETSTTDTVNS ARLTDDQQNM KDTLAAYRTA  720
ADAAARIQAA FREHNLKLRT NAVMSSNPEA EARKIVAAMK IQHAFRNFET KKMMGAAARI  780
QCTFRTWKIR KEFLLMRRQA VKIQAAFRCF QLRKHYRKIL WSVGVVEKAV LRWRLKRRGF  840
RGLQVRTIEV GNGDQDKESV AEEEFFKTGR KQAEERVERS VVRVQAMFRS KKAQEEYRRM  900
KVALDQAKLE REYEQLLSTE VDMELKA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi07g24790.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014510093.1	0.0	calmodulin-binding transcription activator 5
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A1S3UVH2	0.0	A0A1S3UVH2_VIGRR; calmodulin-binding transcription activator 5
STRING	XP_007154355.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]