PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g25560.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 102aa    MW: 11172.2 Da    PI: 9.6086
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g25560.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.91.1e-05124830
                     HHHHHHHHHHHHHHHHHCTSCC.C CS
              HLH  8 rErrRRdriNsafeeLrellPk.a 30
                     +Er RR+++ + f +L++ +P  +
  Vradi07g25560.1  1 MERERRSKMTQMFTQLQTSVPGlL 24
                     6********************844 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.4E-5154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MERERRSKMT QMFTQLQTSV PGLLPQVHQS SSNIPCLVNF MVFGGFGLVT QILKVFCNHQ  60
AEILAANVTV NNGKLILAIT ALVQNNGNCV VEKIKREIMG L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g25560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-88AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022639783.13e-41basic helix-loop-helix protein A-like
TrEMBLA0A0S3R8Y39e-40A0A0S3R8Y3_PHAAN; Uncharacterized protein
TrEMBLA0A3Q0F7D88e-40A0A3Q0F7D8_VIGRR; basic helix-loop-helix protein A-like
STRINGXP_007154231.14e-38(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143301314