PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g27750.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 244aa    MW: 27333.7 Da    PI: 5.4304
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g27750.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.4e-07134181455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR +iN+++  L+ ++P +     k +  a +L + ++Y++sLq
  Vradi07g27750.1 134 SHSLAERVRRGKINEKLRCLQNIVPGC----YKTMGMAIMLDEIINYVQSLQ 181
                      8*************************8....355888999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.21E-9128185No hitNo description
SuperFamilySSF474595.5E-16128198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.589130180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15130192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-5134181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-7136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAEFTADLQS FRPSFPFLDI DNMEIQNLVP FDSLLGSTEP EFPGNLEDNF PGLFQCVDHN  60
AVPALNEVHE GKKREATDMG DPSSGNSTPD ISESGSKTKN ICGRGKRVKR NAVEDKKPNQ  120
VVHVRAKRGQ ATDSHSLAER VRRGKINEKL RCLQNIVPGC YKTMGMAIML DEIINYVQSL  180
QHQVEFLSMK LSAASSYYDF NSESDALETM QRRKASEAKE IEKYVREGSE GVSCFEATWP  240
WYL*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g27750.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-160AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510157.10.0transcription factor BEE 3
SwissprotQ8GWK72e-60BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A1S3UW150.0A0A1S3UW15_VIGRR; transcription factor BEE 3
STRINGXP_007160380.11e-155(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.18e-63BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]