PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g28850.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 92aa    MW: 10206.6 Da    PI: 10.4013
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g28850.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.9e-0918382445
                     HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwq 45
                     W++Ia+ ++ gRt++++k++w+
  Vradi07g28850.1 18 WSLIAAQLP-GRTDNDVKNHWN 38
                     *********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.701145IPR017930Myb domain
SuperFamilySSF466892.65E-9651IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-111751IPR009057Homeodomain-like
CDDcd001674.03E-61838No hitNo description
PfamPF002491.1E-61838IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWWSL IAAQLPGRTD NDVKNHWNAK LKKKFLVTNT NATVDTVCPQ  60
FTTSTTPQSR AENRVFDHEN SAEPRVLVGR L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g28850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-103AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506838.26e-43transcription factor MYB87-like
TrEMBLA0A1S3ULA41e-41A0A1S3ULA4_VIGRR; transcription factor MYB87-like
STRINGXP_007160258.14e-31(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.14e-13myb domain protein 87