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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Vradi07g29990.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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| Family |
BBR-BPC |
| Protein Properties |
Length: 312aa MW: 35121.1 Da PI: 9.9819 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vradi07g29990.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 327.3 | 4.3e-100 | 2 | 311 | 2 | 301 |
GAGA_bind 2 dddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdaki..rernlalsekkaavaerdmaflqrdkalaernkalv 75
+d ++e r+k yy+ ++ ++l +++++ s++aer+a+i e ++a+sek++a+a+rd+a qrd+al +r++a++
Vradi07g29990.1 2 EDGRQNEndRHKMeYYRgphsmwntgsqhqvKEpNALV--MNKKIRSIMAERQAAIleLELEAAISEKNEALAARDEAIRQRDEALVQRDNAIL 93
55544444599988999999999999877663335666..99**************77677889****************************** PP
GAGA_bind 76 erdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkk 169
erdn+l+al+ ++ s + p+g+++ g+k i+++ + + +++ a+++++ + +++ p e +++++k++k+++ ++ +k a k+kk
Vradi07g29990.1 94 ERDNALAALQSRNSS--VTFPFGSGIQCGSKRIHHSSN-HLCIMSEAAYKTKDASPITVVPSEV---KSHQVKRTKENKVIGSKASKPAYKVKK 181
**********97776..78899************8887.6689999999999988888888444...445555555555666666677779999 PP
GAGA_bind 170 ksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqg 263
+e+ ++k + e+ ++ ++e+ +d++ln v++De+t+PvPvC+CtG++rqCYkWGnGGWqS+CCttt+S++PLP+ +++r+aRi+grKmS++
Vradi07g29990.1 182 MGEDLNRKASFEG--TKIRSEWHRQDVGLNLVTFDETTMPVPVCTCTGIPRQCYKWGNGGWQSSCCTTTLSMHPLPQLPNKRHARIGGRKMSGS 273
9999999999888..57***************************************************************************** PP
GAGA_bind 264 afkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+f++lL++L eG+dls p+DLk++WA+HGtn+++ti+
Vradi07g29990.1 274 VFTRLLSRLVLEGHDLSIPLDLKEYWARHGTNRYITIK 311
*************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MEDGRQNEND RHKMEYYRGP HSMWNTGSQH QVKEPNALVM NKKIRSIMAE RQAAILELEL 60
EAAISEKNEA LAARDEAIRQ RDEALVQRDN AILERDNALA ALQSRNSSVT FPFGSGIQCG 120
SKRIHHSSNH LCIMSEAAYK TKDASPITVV PSEVKSHQVK RTKENKVIGS KASKPAYKVK 180
KMGEDLNRKA SFEGTKIRSE WHRQDVGLNL VTFDETTMPV PVCTCTGIPR QCYKWGNGGW 240
QSSCCTTTLS MHPLPQLPNK RHARIGGRKM SGSVFTRLLS RLVLEGHDLS IPLDLKEYWA 300
RHGTNRYITI K*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
