PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g30030.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 199aa    MW: 22196.1 Da    PI: 7.4212
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g30030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.57.9e-171462149
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k 49
                     lppGfrF+Ptdeelv +yLk kv + +l++ ++i+e++++k++PwdLp +
  Vradi07g30030.1 14 LPPGFRFQPTDEELVFQYLKCKVFSYPLPA-SIIPEINVCKHDPWDLPgS 62
                     79****************************.89**************932 PP
2NAM39.41.8e-126110587128
              NAM  87 gkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      g+dk++ s+    +  vg++ktL+fy+g++pkg++tdWv+heyrl
  Vradi07g30030.1  61 GSDKRISSSsnaCNGIVGIRKTLIFYEGKSPKGSRTDWVLHEYRL 105
                      5677777754444556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.5591134IPR003441NAC domain
SuperFamilySSF1019411.57E-3510134IPR003441NAC domain
PfamPF023655.4E-1315105IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MEKLNFVKNG VSKLPPGFRF QPTDEELVFQ YLKCKVFSYP LPASIIPEIN VCKHDPWDLP  60
GSDKRISSSS NACNGIVGIR KTLIFYEGKS PKGSRTDWVL HEYRLANAET AACNSSHNYV  120
NEIGDWVLCR LSMKKRSIES GVDEKQRVHG GPRLMFDFMM LGKTDSSTSS SCSSSNNIME  180
VSSNVSDHEE TSGSYTYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-271413917170NO APICAL MERISTEM PROTEIN
1ut4_B3e-271413917170NO APICAL MERISTEM PROTEIN
1ut7_A3e-271413917170NO APICAL MERISTEM PROTEIN
1ut7_B3e-271413917170NO APICAL MERISTEM PROTEIN
3swm_A4e-271413920173NAC domain-containing protein 19
3swm_B4e-271413920173NAC domain-containing protein 19
3swm_C4e-271413920173NAC domain-containing protein 19
3swm_D4e-271413920173NAC domain-containing protein 19
3swp_A4e-271413920173NAC domain-containing protein 19
3swp_B4e-271413920173NAC domain-containing protein 19
3swp_C4e-271413920173NAC domain-containing protein 19
3swp_D4e-271413920173NAC domain-containing protein 19
4dul_A3e-271413917170NAC domain-containing protein 19
4dul_B3e-271413917170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g30030.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-132AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508020.11e-132NAC domain-containing protein 83
SwissprotQ9FY935e-46NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A1S3UPU81e-130A0A1S3UPU8_VIGRR; NAC domain-containing protein 83
STRINGXP_007159989.11e-127(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-47NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]