PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g30610.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 622aa    MW: 70198.4 Da    PI: 6.7349
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g30610.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.24.1e-15423469455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h + ErrRR+++N++f +Lr+++P+ +      K +K++iL  A+eY+k+L+
  Vradi07g30610.1 423 NHVMSERRRRAKLNERFLTLRSMVPSiS------KDDKVSILDDAIEYLKKLE 469
                      799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.0E-497184IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.844419468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-18421486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-14422473No hitNo description
PfamPF000101.7E-12423469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-18423478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-14425474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MVPENMKKQL ALSVRSIQWS YAILWTDSTT QPGVLRWGEG YYNGDIKTRK TSQGVELNSD  60
QIGLQRSEQL RELFKSLKTT EITPQSKRPS AALSPEDLTD AEWYYLVCMS FVFNIGQGLP  120
GRALAKGQSI WLNNAHSADC KVFSRSLLAK TVVCFPVMEG VIELGTTEHV SEDFSLIERI  180
KTSFLNNLHV NDPIKSGTTL KSRNQEDLAY VAFDNNVESF PEIGYEIASK TSPDGSSNAF  240
QANQPLDETF MVERITSGTS QVQSWQVMDD EISNCVHNSM NSSDCISQTF ASPENIPSAP  300
KCNNPSDPFA RDIQKCNNPK MTLVEPRGDD WHYQRVLSDL LKTSDQLLMK MHSQKFHQES  360
SFVCWRPERA TDCQWPRSGT SQKLLKKVLF EVPQMHMDGL HESQEENDYK EGMRLETDEI  420
GMNHVMSERR RRAKLNERFL TLRSMVPSIS KDDKVSILDD AIEYLKKLEK RIKELEVQRG  480
IANMEPGTRR SPQDMVERTS DHYFSKNNNG KKSVVKKRKV CGVDETGKEI NSDALKGSYA  540
NDITVRTSDN EIVIEMKCPS RSGRLLEIME AVNSLSIDFN SVQSTEADGN LYLTIKSVLT  600
GATIATTKRI KQALQKVASK F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-141918424192Transcription factor MYC3
4rqw_B3e-141918424192Transcription factor MYC3
4rs9_A3e-141918424192Transcription factor MYC3
4yz6_A3e-141918424192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g30610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510359.10.0transcription factor EGL1
TrEMBLA0A0L9VQT80.0A0A0L9VQT8_PHAAN; Uncharacterized protein
STRINGXP_007160070.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-159bHLH family protein