PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g00060.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 224aa    MW: 25681.2 Da    PI: 8.1223
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g00060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.12.1e-0598133545
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLe 45 
                      h ++Er RR+r +++   L ++lP+      +K +  ++ +
  Vradi08g00060.1  98 HMINERMRRQRQRQCCLALHSILPHG-----TKTDNNSVIQ 133
                      7899*********************6.....3444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.11E-1090156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.89693142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-598156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDSFFPEKLL GEIFWDQPLL PTDQNDVVQN SQIIKAEAFP PATQSAFVQY RDLPRRNNPL  60
NGSNSESMSK RMLAFLRKSS PVERNNVEEN ERDRSFRHMI NERMRRQRQR QCCLALHSIL  120
PHGTKTDNNS VIQTAAKEIV RLQGCREELQ RKNCEAEGVC VRKKDGGSKI AYLRVADPEC  180
GIDSMVERLK WLKEEGVESR RIKSSFSPKE LFAVLEIESG EEV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g00060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014513121.11e-165transcription factor bHLH92
TrEMBLA0A1S3V4441e-164A0A1S3V444_VIGRR; transcription factor bHLH92
STRINGXP_007145939.11e-135(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125722734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.14e-24bHLH family protein