PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g00340.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 177aa    MW: 20105.9 Da    PI: 6.6752
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g00340.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000212646323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C+ C+++F++   L  H+ +H
  Vradi08g00340.1 26 CKLCNQVFTNTQALLIHLESH 46
                     ******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.392451IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MTNFYNDVLN HAQFFELGNN TSSKGCKLCN QVFTNTQALL IHLESHMAQE EIAIKRLYSL  60
PQHVNYQKQL GFQLPIQPMM GDGRVFQAQT QPIMEMSHSI RRNPFSSQVG SSSIPIRRMQ  120
IRSQVFPYGA SINDDGSKAY ILKLEKPIKK IDFIDLVNTD DDINSEVEEV DLNLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g00340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145903.12e-72hypothetical protein PHAVU_007G277300g
TrEMBLA0A0L9TUP81e-109A0A0L9TUP8_PHAAN; Uncharacterized protein
STRINGXP_007145903.17e-72(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1527958