PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g00620.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 90aa    MW: 10391 Da    PI: 8.2353
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g00620.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605.1e-19552148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed++l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
  Vradi08g00620.1  5 KGPWTQDEDQILISYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYL 52
                     79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.998156IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.5E-25255IPR009057Homeodomain-like
SMARTSM007179.8E-15454IPR001005SANT/Myb domain
PfamPF002491.1E-17552IPR001005SANT/Myb domain
SuperFamilySSF466896.83E-25679IPR009057Homeodomain-like
CDDcd001673.30E-11752No hitNo description
PROSITE profilePS500904.1125384IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.9E-95679IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MGLKKGPWTQ DEDQILISYI QKHGHGNWRA LPKLAGLLRC GKSCRLRWIN YLKPDIKRGN  60
FSSEEEEIII KMHELLGNRS EESIELPEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-1838625107MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g00620.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0291602e-75AB029160.1 Glycine max GmMYB29A1 gene, complete cds.
GenBankBT0986622e-75BT098662.1 Soybean clone JCVI-FLGm-12F16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511116.18e-53transcription factor MYB15
RefseqXP_017414677.18e-53PREDICTED: myb-related protein Myb4-like
SwissprotQ7XBH42e-44MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A0L9TU472e-51A0A0L9TU47_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SUZ42e-51A0A0S3SUZ4_PHAAN; Uncharacterized protein
TrEMBLA0A1S3UYG02e-51A0A1S3UYG0_VIGRR; transcription factor MYB15
STRINGXP_007145850.11e-49(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-44myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]