PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi08g01230.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LBD

Protein Properties

Length: 158aa MW: 17629.1 Da PI: 6.2232

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi08g01230.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	89.9	3.3e-28	3	92	11	100
DUF260 11 kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +C+++C++apyf +++ +kfa vhk+FGasnv+k+l +++ee+red+++sl+yeAea++r vyG++ i lq+++ +l+++la +k++ Vradi08g01230.1 3 TCVPNCIFAPYFRSDECNKFAKVHKVFGASNVSKILIEVSEEQREDTVNSLAYEAEAKLRGLVYGCIDAIALLQRKMVELQHDLAIAKDR 92 7***********************************************************************************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.796	1	93	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.8E-28	3	90	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MSTCVPNCIF APYFRSDECN KFAKVHKVFG ASNVSKILIE VSEEQREDTV NSLAYEAEAK 60 LRGLVYGCID AIALLQRKMV ELQHDLAIAK DRLARCHAAA TVLPSPDILR AHVSLPPFPN 120 FCTSSNDFND IFCHSSSSQL FSRHETVDDF NQIPYIF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-32	4	95	22	113	LOB family transfactor Ramosa2.1
5ly0_B	6e-32	4	95	22	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi08g01230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014511336.1	1e-114	LOB domain-containing protein 21-like
Swissprot	Q9SRL8	9e-42	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A1S3UZ32	1e-112	A0A1S3UZ32_VIGRR; LOB domain-containing protein 21-like
STRING	XP_007163564.1	1e-103	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	4e-44	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]