PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g01980.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 372aa    MW: 41840.6 Da    PI: 8.1237
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g01980.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.41.8e-29129180455
          G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      ++Wt++LHe+Fv av++LGG++kAtPk++l++m+ k+Lt+ hvkSHLQkYR+
  Vradi08g01980.1 129 IKWTEDLHEQFVAAVNNLGGAQKATPKAVLKMMNSKSLTIFHVKSHLQKYRS 180
                      79*************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.34E-15124181IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-26125181IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-22126180IPR006447Myb domain, plants
PfamPF002493.3E-8130179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MYHSSQELNG VHNSVANVGG SENNSFNFQH HEQHLFDVPV SCLNFDSQNF LCQSSGDHSA  60
PVFGSVLDSF LSSHEDKFCE TYNVYEHFRN EKNNILEGGA SAPVNGVEVV SATSGNSASS  120
MVPTRKKGIK WTEDLHEQFV AAVNNLGGAQ KATPKAVLKM MNSKSLTIFH VKSHLQKYRS  180
TMYVKNTSRE GHEESHGRDM VTELQQKICM QIEESRKLQL EIGRASTKSA NASPRTKETV  240
REFGFVNGDE ICVKRLRELG VSTITDSLCF EAALVFVIAR GRRRREGFTW FTHGGPVMVR  300
MMEVCHDEGW AKMMMHGGLR EKILWWRHMM LRRLMVVVWM VGEAMAGTRI HDDGTRKGKG  360
IRVLEVEDKV D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-19126183259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-19126183259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-19126183259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-19126183259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-19126183259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-19126183259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-19126183259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-19126183259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g01980.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-155AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412851.11e-158PREDICTED: myb family transcription factor PHL5-like
TrEMBLA0A0S3SUH81e-157A0A0S3SUH8_PHAAN; Uncharacterized protein
STRINGGLYMA02G30714.11e-110(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1870146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.27e-27G2-like family protein