PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g01990.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SBP
Protein Properties Length: 174aa    MW: 19017.1 Da    PI: 7.8369
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g01990.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP40.19.9e-131264974
                     EEETTT--SS--S-STTTT------- CS
              SBP 49 fhelsefDeekrsCrrrLakhnerrr 74
                     fh lsefD++krsCrrrLa+hnerr 
  Vradi08g01990.1  1 FHLLSEFDQGKRSCRRRLAGHNERRP 26
                     9***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114113.289128IPR004333Transcription factor, SBP-box
PfamPF031108.7E-7125IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.37E-9128IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
FHLLSEFDQG KRSCRRRLAG HNERRPDNNG RAGGFLMEFS SYPKLTLRTT LPTPRSAEPL  60
PGNHAATWQT GSGTPSEFFM HGSGSGGTSF LGSKHPFVES YTGFAAIHQL PNATSWYLKA  120
LDSPEGVPDL GLGQISPSLH SHLHGELDLP HHGRRHYMDL GDSRACESPQ WSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g01990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-110AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511371.11e-102squamosa promoter-binding-like protein 9 isoform X1
TrEMBLA0A1S3UZ661e-100A0A1S3UZ66_VIGRR; squamosa promoter-binding-like protein 9 isoform X1
STRINGXP_007145670.13e-87(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.13e-10squamosa promoter binding protein-like 1