PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g02110.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 308aa    MW: 33519.3 Da    PI: 8.4807
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g02110.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.3e-13239284655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  Vradi08g02110.1 239 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 284
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148233283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-16236298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.41E-13237286No hitNo description
Gene3DG3DSA:4.10.280.105.9E-15238296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-10239284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11239289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MNSHKGYGGG LPPHYPRHGS SSATSSSSME GSYGLVGSMG MDHEAPNKGF GSSLLRQSSS  60
PAGLFSNNNV SFQNGFVSMK GVGNYGGVND NNGELSPCIS RLKNQINFSP RNSSSLGMLS  120
QISEIGNEDM ETTSPDDNTS HGGNDTQHFG PGFPYGSWNE TPQLSENLSG LKRGRSDNEK  180
IFSDVQNGEP GNQVHILSHH LSLPKTSAEM ITMEKLLQFP DSVPCKIRAK RGCATHPRSI  240
AERVRRTRIS ERMRKLQELV PNMDKQTNTA DMLDLAVEYI KDLQKQFKTL SDKRANCKCS  300
SMQKADS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g02110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-165AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512557.10.0transcription factor bHLH130 isoform X2
SwissprotQ66GR31e-89BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A1S3V2Z70.0A0A1S3V2Z7_VIGRR; transcription factor bHLH130 isoform X2
STRINGXP_007145653.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-87bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]