PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi08g02140.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 263aa MW: 28816.4 Da PI: 5.9728

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi08g02140.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.7e-09	100	147	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L k +++++sLq Vradi08g02140.1 100 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDKIINHVQSLQ 147 8***********************9....899999***********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.15E-15	94	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.58E-10	94	151	No hit	No description
PROSITE profile	PS50888	14.462	96	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-14	97	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.5E-7	100	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-8	102	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MLEAIQFNEE IQGIIAPAPE TASSFTALLE LPPTQAGGGS ASDPTLENKD EKGLKRKERE 60 KKVKASSKKS KSVVPDDSSC DGQKLPYVHV RVRRGQATDS HSLAERARRE KINARMKLLQ 120 ELVPGCNKIS GTALVLDKII NHVQSLQHEV EILSMKLAAV NPVIDFNLDS LLATEGVSPM 180 DCNFPPTVAP VVWPEIPQNA NRQQYQQPWQ FDAFHHQPIW GREEDNTNFM TPENSLLSYD 240 SSANSVEDGA LKGYRGGGTS SN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi08g02140.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-109	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014514536.1	1e-140	transcription factor bHLH48 isoform X2
Swissprot	Q8VZ02	5e-60	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A1S3V864	1e-138	A0A1S3V864_VIGRR; transcription factor bHLH48 isoform X2
STRING	XP_007145649.1	1e-133	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4985	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	3e-65	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]