PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g02500.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 187aa    MW: 22156.4 Da    PI: 9.6779
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g02500.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.16e-33211122102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+y ++ed+++++++sw+++g++fvvl++ efa+++Lp+ F h nf+SFvRQLn+YgF+kv++++         weF ++ F+kg+kell+
  Vradi08g02500.1  21 FLLKTYMLVEDPTTNDVVSWNDDGTTFVVLQPAEFARDLLPTLFNHCNFSSFVRQLNTYGFRKVRRSR---------WEFCNERFRKGEKELLC 105
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +++rkks
  Vradi08g02500.1 106 EMRRKKS 112
                      ****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.8E-4917110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.16E-3218110IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.0E-3518110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.7E-172144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-2921110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-175971IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-177284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEEETEKGLL ECVRKFSTAP FLLKTYMLVE DPTTNDVVSW NDDGTTFVVL QPAEFARDLL  60
PTLFNHCNFS SFVRQLNTYG FRKVRRSRWE FCNERFRKGE KELLCEMRRK KSWVRKKQNE  120
RSLASRFSSN YAVLMDENKR LKKENKVLQS ELTTIKTKCR DLLDLVTKYS SAKPERLRFE  180
QVQEES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B9e-24181101104Putative transcription factor
5d5x_B9e-24181101104Putative transcription factor
5d5x_E9e-24181101104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g02500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-116AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511403.11e-134heat stress transcription factor B-3-like
SwissprotO222301e-57HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A1S3UZ931e-133A0A1S3UZ93_VIGRR; heat stress transcription factor B-3-like
STRINGXP_007145595.14e-90(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.15e-60heat shock transcription factor B3