PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g03240.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 199aa    MW: 22351.3 Da    PI: 9.9285
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g03240.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.8e-054466123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C+k F+++  L  H++ H
  Vradi08g03240.1 44 FSCKFCNKKFPSSQALGGHQNAH 66
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.1E-54070IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.49E-74171No hitNo description
PROSITE profilePS5015711.2814471IPR007087Zinc finger, C2H2
PfamPF139124.7E-64468IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MSLGNNKMVG ESSSMPICNS LKNPNPVDSS NPNNQLIVPK QRQFSCKFCN KKFPSSQALG  60
GHQNAHRRER VLSRIDREFD MGTFGLGVHM YPYSTMAHQH PFRAQIPFFY ESNMHPMTQM  120
STMPWPFVPS YGNQGLHNTS TSGQRFGGIS VEAPQNVYHR GLGFGFEHNQ VPPFDPTMPR  180
PSLSGLMRNQ YNIGNQPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g03240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412887.11e-130PREDICTED: uncharacterized protein LOC108324450
TrEMBLA0A0L9TVR71e-129A0A0L9TVR7_PHAAN; Uncharacterized protein
STRINGXP_007145517.13e-93(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF142291217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.19e-13zinc finger protein 7