PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g03300.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 248aa    MW: 28176.6 Da    PI: 4.8616
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g03300.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like57.43.1e-183471139
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvk 39
                     +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+
  Vradi08g03300.1 34 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVD 71
                     59*******************.***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.78E-93172IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-163371IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-123572IPR006447Myb domain, plants
SuperFamilySSF540011.69E-9132226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MYFISFDITN SSHHQFPLQP PSAAEDEPAR TLKRPRLVWT PQLHKRFVDA VAHLGIKNAV  60
PKTIMQLMSV DDEEVGDEES VEQPRTFINI GDDEEDEVNV VVEPMVVEPL YTFVGDPRET  120
VDVFILYFLA TRKGIVQSYV CEIMGQLLTT KDCNSLGHRE CVDNMVIIFA ATMFMYFEKR  180
STGSIKRIIF SPMFAVFIPV VSSGHWWCYA LKVCTMQFFV IDSLDKGIRG CSGIDKSIVC  240
FRVVVEW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-193471138Transcription factor LUX
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g03300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150413e-98AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014524446.11e-102uncharacterized protein LOC106780659
TrEMBLA0A1S3W1M01e-100A0A1S3W1M0_VIGRR; uncharacterized protein LOC106780659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.16e-25G2-like family protein