PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g05100.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 175aa    MW: 19695.2 Da    PI: 6.789
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g05100.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.41.8e-192471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd llv++v+++G g+W++++r  g++R +k+c++rw +yl
  Vradi08g05100.1 24 KGPWTAEEDRLLVEYVRLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYL 71
                     79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.1521975IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-222174IPR009057Homeodomain-like
SMARTSM007171.6E-162373IPR001005SANT/Myb domain
PfamPF002491.0E-172471IPR001005SANT/Myb domain
SuperFamilySSF466892.47E-232598IPR009057Homeodomain-like
CDDcd001671.90E-122671No hitNo description
Gene3DG3DSA:1.10.10.601.5E-77598IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MYWGKVLGGQ IGGGGVMEEE VWRKGPWTAE EDRLLVEYVR LHGEGRWNSV SRLAGLKRNG  60
KSCRLRWVNY LRPDLKRGQI TPQEESIILE LHARWGNRAP YAASQSRQEM INMQQNTTEE  120
QGFLYSMLNG NFSAAETSPE ETFLDGLWNL DHGNFTVASA ASKVGLYNLV APFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-1539817100MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g05100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0967531e-102BT096753.1 Soybean clone JCVI-FLGm-15B2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027935634.12e-59transcription factor MYB108-like isoform X1
TrEMBLA0A0S3STF12e-64A0A0S3STF1_PHAAN; Uncharacterized protein
STRINGXP_007145351.18e-59(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.16e-50myb domain protein 79