PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g05240.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 192aa    MW: 21107.7 Da    PI: 6.7922
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g05240.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.12.6e-141767155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + ykGVr++  +g+Wv+eIr p  n+k++r++lg+f   ++Aa a++ a+++++g
  Vradi08g05240.1 17 PVYKGVRQR--NGKWVSEIRQP--NNKNARVWLGTFARSDMAAVAYDVAALAFKG 67
                     68****975..6*********9..3467**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-91767IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-171875IPR016177DNA-binding domain
PROSITE profilePS5103219.4011875IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-261875IPR001471AP2/ERF domain
SMARTSM003802.2E-241881IPR001471AP2/ERF domain
CDDcd000181.21E-221975No hitNo description
PRINTSPR003678.7E-61930IPR001471AP2/ERF domain
PRINTSPR003678.7E-65777IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MQKRKAGRKK FHETRHPVYK GVRQRNGKWV SEIRQPNNKN ARVWLGTFAR SDMAAVAYDV  60
AALAFKGDGA SLNFPGAISS LPRLNSATSS VRAIQFAASQ AAEKHFSCAE LQKLGDDLSS  120
EGGSGSFSWD EDCSELSSEE GSRKFFWDEE EVFNMPELLN SMAEALIITP PALQKGFNWV  180
GGETTVDLTL W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-131980668ATERF1
3gcc_A2e-131980668ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g05240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412974.11e-117PREDICTED: ethylene-responsive transcription factor ERF024-like
TrEMBLA0A4D6MZ261e-123A0A4D6MZ26_VIGUN; EREBP-like factor
STRINGXP_007145241.11e-113(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.14e-33C-repeat/DRE binding factor 1