PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g05990.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 187aa    MW: 21739.9 Da    PI: 9.9919
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g05990.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.2e-192983357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                     k+ ++t++ql+ Le+ F+k+ +++ +++ +L+k+lgL+ rq+ vWFqNrRa++k+
  Vradi08g05990.1 29 KKKRLTTDQLDSLESSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKN 83
                     56679************************************************95 PP
2HD-ZIP_I/II118.44e-3829119292
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      kk+rl+++q+ +LE+sF++e kL+p+rK++l++eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++d +++e+++Le+ev +L+  l+
  Vradi08g05990.1  29 KKKRLTTDQLDSLESSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDSLKQEFDVISKEKQKLEEEVMKLKGMLR 119
                      9*************************************************************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-191486IPR009057Homeodomain-like
PROSITE profilePS5007117.1842484IPR001356Homeobox domain
SMARTSM003895.3E-182788IPR001356Homeobox domain
PfamPF000468.5E-172983IPR001356Homeobox domain
CDDcd000862.97E-152985No hitNo description
Gene3DG3DSA:1.10.10.601.4E-213192IPR009057Homeodomain-like
PRINTSPR000312.6E-55564IPR000047Helix-turn-helix motif
PROSITE patternPS0002705982IPR017970Homeobox, conserved site
PRINTSPR000312.6E-56480IPR000047Helix-turn-helix motif
PfamPF021833.0E-884118IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGAQDVMFLD QTLPSASFTT TTTHHTQDKK KRLTTDQLDS LESSFQKEIK LDPDRKMKLS  60
KELGLQPRQI AVWFQNRRAR WKNKQLEHLY DSLKQEFDVI SKEKQKLEEE VMKLKGMLRE  120
QASRTQVSTV KVMENPFSVG TDIRDQIKAI QQRDLHVVGW YGNYDVKLAV PADITLLVHS  180
KMHENR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17684RRARWKNKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g05990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-138AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145270.13e-66hypothetical protein PHAVU_007G224800g
SwissprotQ4PSR73e-44ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22
SwissprotQ9LZR07e-44ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLV7BH877e-65V7BH87_PHAVU; Uncharacterized protein
STRINGXP_007145270.11e-65(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.17e-46homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]
  3. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]