PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g06860.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 202aa    MW: 22443.7 Da    PI: 6.6287
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g06860.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-1861111356
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y GVr ++ +g+++AeIrd + ng  +r++lg+f++ae Aa a+++a+ +++g+
  Vradi08g06860.1  61 YIGVRKRP-WGKYAAEIRDTTRNG--TRVWLGTFDSAEAAALAYDQAAFSMRGH 111
                      89******.**********54465..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-3560124IPR001471AP2/ERF domain
PROSITE profilePS5103222.23460118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-3060119IPR001471AP2/ERF domain
PfamPF008471.5E-1360111IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-2261119IPR016177DNA-binding domain
PRINTSPR003672.9E-96172IPR001471AP2/ERF domain
CDDcd000187.14E-1961119No hitNo description
PRINTSPR003672.9E-984100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MFQEPSEILF ESLSSNHVLD TVHDSLSFDM VEESTTEENT NKAKQLVAKG TAEAKNKERS  60
YIGVRKRPWG KYAAEIRDTT RNGTRVWLGT FDSAEAAALA YDQAAFSMRG HNAVLNFPVK  120
XVKESLQEIQ YTCFTGSSPA LALXERHCIQ RKLSSQAKKS KGKNPSEHPT PTLLVLEDLG  180
VEYLDHLLSI SDQTQSPSCF H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2759120162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g06860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-160AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511606.11e-148ethylene-responsive transcription factor 1B-like
TrEMBLA0A1S3UZU71e-147A0A1S3UZU7_VIGRR; ethylene-responsive transcription factor 1B-like
STRINGXP_007144910.11e-100(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-44ethylene response factor 1