PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g07560.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 502aa    MW: 55772.8 Da    PI: 5.0161
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g07560.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like39.41.4e-12259286128
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAt 28 
                      k r+rWtpeLHe+Fveav+qLGGse  +
  Vradi08g07560.1 259 KSRMRWTPELHEAFVEAVNQLGGSETCV 286
                      68*********************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.09E-5256291IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-10258296IPR009057Homeodomain-like
PfamPF143797.2E-25366413IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MEAHPTFSIE RSKQLNSMGM SGALSSSLSI LPIPTEDMYP RLPESQLDIV EQELMTRPYT  60
HSSYLNSNGV VGHIISSSSG YSIDLHHSSL SPDEKHSTNA HFISQSSTNI AQFPLSYSSS  120
TALPTSATPT HFSKENSASW HSESLPSFLD FPAHDSMDDN RVESSDCPIM ASEEYCKQND  180
WQEWADRLIS DDDTLTSNWD DLLTDNIRDI EPKVPFQVAK PLSQFPGHQS QGLQQLPASL  240
GENCSGATLS SSANSTPAKS RMRWTPELHE AFVEAVNQLG GSETCVRLLK HIWHEMKKYR  300
TARYRPESSE GVAEKKAGSI EEMSSLDLKT SSFINMTFAG ANVTSPEEFE LIMLHVMVYG  360
IAVNGIEITE ALRLQMEVQK RLHEQLEIQR NLQLRIEEQG RYLQMMFEKQ RKSETEALKA  420
SSSTIESQSG VSSNATRDFP VKNVLEATQV DHCRSGPDQA NRSTTVEEGS LEKGRNPDSP  480
KTQHGIASDD SAQAPKRQRT E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g07560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014513979.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X1
RefseqXP_014513980.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X1
RefseqXP_014513983.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X1
RefseqXP_014513984.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X1
RefseqXP_014513986.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X3
RefseqXP_014513989.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X3
RefseqXP_014513990.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X3
RefseqXP_022640290.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X3
TrEMBLA0A1S3V7660.0A0A1S3V766_VIGRR; protein PHOSPHATE STARVATION RESPONSE 1 isoform X1
TrEMBLA0A1S3V7760.0A0A1S3V776_VIGRR; protein PHOSPHATE STARVATION RESPONSE 1 isoform X3
STRINGXP_007144858.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15123498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.11e-60phosphate starvation response 1