PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g08100.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 142aa    MW: 15772.2 Da    PI: 10.2112
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g08100.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.000481739123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ Fs+   L  H  +H
  Vradi08g08100.1 17 FQCKTCNRKFSSFQALGGHRASH 39
                     89**********99999998887 PP
2zf-C2H214.30.000126183123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++Cg+ Fs    L  H+r+H
  Vradi08g08100.1 61 HECSICGQGFSLGQALGGHMRKH 83
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.9E-41235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0991739IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.98E-91783No hitNo description
PfamPF139121.0E-101741IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.2631744IPR007087Zinc finger, C2H2
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-45983IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.5E-96084IPR007087Zinc finger, C2H2
SMARTSM003550.116183IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8276183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MVAVLKRQRE KESQEEFQCK TCNRKFSSFQ ALGGHRASHK KPKLEGEEGK DLSLSRKPKT  60
HECSICGQGF SLGQALGGHM RKHRVGTNEG FSSVIAEAPL LKRWNSSKRV MCLELDLNLT  120
PLENDLKLLF GNKAPTVHLS L*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g08100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512829.21e-100zinc finger protein ZAT11
SwissprotQ9SLD42e-41ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A1S3V3V62e-98A0A1S3V3V6_VIGRR; zinc finger protein ZAT11
STRINGXP_007144473.15e-79(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.18e-44C2H2 family protein