PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g09140.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 203aa    MW: 22872.6 Da    PI: 9.7779
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g09140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.4e-064062123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C+k F r  nL+ H r H
  Vradi08g09140.1 40 FVCEICNKGFQRDQNLQLHRRGH 62
                     89*******************88 PP
2zf-C2H213.80.00018116138123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k +  +s+ k H +t+
  Vradi08g09140.1 116 WKCEKCSKIYAVQSDWKAHSKTC 138
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.58E-73962No hitNo description
Gene3DG3DSA:3.30.160.605.1E-63962IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121712.5E-54062IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9494062IPR007087Zinc finger, C2H2
SMARTSM003550.0174062IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
SMARTSM0035517081111IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.9E-5104137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.58E-7111136No hitNo description
SMARTSM00355170116136IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MFPSVMSNSN SLSEEATVSC DPDAEVIALS PKTLLATNRF VCEICNKGFQ RDQNLQLHRR  60
GHNLPWKLKQ RNNKEVKKKA YVCPEPSCVH HNPSRALGDL TGIKKHYCRK HGEKKWKCEK  120
CSKIYAVQSD WKAHSKTCGT REYRCDCGTL FSRGSLKKIW MIFALYGNGT KIDFTLVLNA  180
RAVVGCMKVD TAKIQVSICK SD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-22112153344Zinc finger protein JACKDAW
5b3h_F6e-22112153344Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g09140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017415647.11e-105PREDICTED: protein indeterminate-domain 12-like
SwissprotQ9SCQ62e-89IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A0B2QC931e-105A0A0B2QC93_GLYSO; Zinc finger protein MAGPIE
TrEMBLA0A0L9TWV61e-104A0A0L9TWV6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SRW81e-104A0A0S3SRW8_PHAAN; Uncharacterized protein
TrEMBLA0A1R3I5021e-104A0A1R3I502_COCAP; Uncharacterized protein
STRINGXP_007144666.11e-104(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.19e-92indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]