PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g09990.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CO-like
Protein Properties Length: 314aa    MW: 35653 Da    PI: 7.5455
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g09990.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.25.1e-06849237
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                     ++r+C+ +++  + l+C+ ++  lC  C  + H         H
  Vradi08g09990.1  8 KQRTCDYCGDFTALLYCRADSAKLCFFCDRKLH-FpnqlfskH 49
                     789*******99*****************9999.334455555 PP
2CCT65.51.6e-22267310144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R+ allRY+eK+ktR+++K+irYesRK+ AesR R+KGrFvk +
  Vradi08g09990.1 267 RDSALLRYREKKKTRRYDKHIRYESRKVHAESRMRIKGRFVKDE 310
                      899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.296754IPR000315B-box-type zinc finger
SMARTSM003361.2E-9754IPR000315B-box-type zinc finger
CDDcd000211.53E-41054No hitNo description
PROSITE profilePS5011910.2815097IPR000315B-box-type zinc finger
CDDcd000210.001255497No hitNo description
SMARTSM003361.55597IPR000315B-box-type zinc finger
PfamPF062031.9E-17267309IPR010402CCT domain
PROSITE profilePS5101714.942267309IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MNASPNQKQR TCDYCGDFTA LLYCRADSAK LCFFCDRKLH FPNQLFSKHS RTQLCDECGD  60
SPASVLCYAE NSVFCHHCDC ENHNNHLLSQ QHQRRPLQGF SGCPSVIHML MIFGLTEKSL  120
LSTEVGSSHH HGLSNLHVWN APSVFGLEDF IASSSSYKNR KGACGRQKEE ILSQLGELIK  180
LEPDLIHGEV DAAEPQKQFG NLSTGFERDI ETNMFPSYEA GVFRWHGESS DRANQIVPSD  240
NSVSDYSELV SAKDPSFTIP VATTHERDSA LLRYREKKKT RRYDKHIRYE SRKVHAESRM  300
RIKGRFVKDE TQK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g09990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022641108.10.0zinc finger protein CONSTANS-LIKE 15 isoform X1
TrEMBLA0A3Q0FBB60.0A0A3Q0FBB6_VIGRR; zinc finger protein CONSTANS-LIKE 15 isoform X1
STRINGXP_007144560.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.13e-62B-box type zinc finger protein with CCT domain