PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g10980.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 193aa    MW: 22145 Da    PI: 6.9344
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g10980.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.3e-163578146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg+ T +E+ l++d++ ++G++ W++Ia++++ gRt++++k++w++
  Vradi08g10980.1 35 RGNITLQEQILILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 78
                     7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.72E-152380IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-222582IPR009057Homeodomain-like
PROSITE profilePS5129422.8923084IPR017930Myb domain
SMARTSM007171.3E-133482IPR001005SANT/Myb domain
PfamPF002492.8E-143578IPR001005SANT/Myb domain
CDDcd001672.22E-103978No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDTNCGPLVK TQAKMQYAEN EILRWLNYLR PDVRRGNITL QEQILILDLH SRWGNRWSKI  60
AQHLPGRTDN EIKNYWRTRV IKQAKQLRCD VNSKEFRDTL RYVWMPRLLE RIQPASQILQ  120
PQIKLDPGPT QIQGFHGLDS VTPAGSFSDS SSVELHSDCS GSGLDPWEEG NGGGEWLESL  180
WNELEIKYSS LP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-12248448108B-MYB
1gv2_A4e-1224764597MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g10980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-126AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512333.11e-131transcription factor MYB2-like isoform X2
TrEMBLA0A1S3V1W41e-130A0A1S3V1W4_VIGRR; transcription factor MYB2-like isoform X2
STRINGXP_007145121.11e-82(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.11e-53myb domain protein 2