PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g11780.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 161aa    MW: 18523.7 Da    PI: 10.2188
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g11780.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.81.4e-131857342
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i++ + r+ t+ kR++gi+KK  EL +LC++ ++ ii s+
  Vradi08g11780.1 18 ISDVTARKSTYKKRKKGIIKKVRELTILCGIPACAIISSP 57
                     8999*********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-19867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.839856IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-21889IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-71030IPR002100Transcription factor, MADS-box
PfamPF003196.5E-131857IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-73045IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MRKCNRCMTR QKVKLAYISD VTARKSTYKK RKKGIIKKVR ELTILCGIPA CAIISSPFEA  60
KAEIWPDPEG AKEVIQRYMD ASVIDESKNV NQESFLIQRI SKAQEQLKKL RQENQEKEKI  120
LSIFSYMQGQ DLPTDVQELK QLKKLIDNTL KETKINSQSM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12832KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g11780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511132.11e-107agamous-like MADS-box protein AGL80 isoform X1
TrEMBLA0A1S3UYH61e-106A0A1S3UYH6_VIGRR; agamous-like MADS-box protein AGL80 isoform X1
STRINGXP_007145049.16e-83(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13237929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.11e-35M-type_MADS family protein