PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g11790.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 764aa    MW: 82347.4 Da    PI: 6.2988
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g11790.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.5e-16461507455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Vradi08g11790.1 461 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 507
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-20454517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-20454515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349457506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-17460511No hitNo description
PfamPF000101.2E-13461507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17463512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
LAREKLGTEN NSTRASDQCS SPENDFFELV WENGQISSQG QSSKVRRSPS CRSLPSHCLP  60
SHSPKGRDKD VGYGANRMGK FRDLDSGLNE ISMSVPSREV DFCQDEDVLP WFDYPTMDDS  120
LQHDYGSDFL PAPTSFTLSD KKSNSSMALR DSHKTSEEQG NAFDDSSAEQ VGNVEPKAIT  180
NQLYPPSLHH CQTSFVSSRS RTSDITENNS TSNANQDATY GEITNFLSSS SDFSSPKGKK  240
QEPPLPGNGS SSTIMNFSHF ARPAAKVRAN LQNIGLKSGL SSARSDSMEI KNKDAAATSS  300
NPPESVVVDS GGECPKELTI HCQQNVDQSK TNLNTSLSKA VEQSAVLSKQ SETAFNESST  360
KIDKIADRVL GDSGVKGQTT AEKSMEAAVA SSSVCSGNGA DRGSDEPNKN VKRKRKDTDD  420
SECHSERTFY MKDAEEESAG VKKAAGGRGG TGSKRTRAAE VHNLSERRRR DRINEKMRAL  480
QELIPNCNKV DKASMLDEAI EYLKTLQLQV QIMSMGAGLY MPPMMLPAGM QHMHAPHMTP  540
FSPLGVGMHM GYGMGYGVGM PDMNGGSSRF PMIQVPQMQG SHIPVAQMSG PTALHGMTGS  600
NLPRLGLPGQ GHPMPMPRAP VLPFSGGPVM NSSALGLNAC GLSGLVETVD SASASGLKDQ  660
MPNVGPLVKQ SIGGGDSTSQ MPTQSIAIPM INFHFNENIL LPFFYSSLHV CVLQFCYARV  720
KQLLLDLSNL LWFITAVIPL GLMTMELLIL VPADNVMSGY DPE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1465470ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g11790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022640840.10.0transcription factor PIF3 isoform X1
TrEMBLA0A3Q0F9U60.0A0A3Q0F9U6_VIGRR; transcription factor PIF3 isoform X1
STRINGXP_007145054.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-51phytochrome interacting factor 3