PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g13060.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GeBP
Protein Properties Length: 529aa    MW: 59704.9 Da    PI: 5.1771
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g13060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57382.94.6e-26254351297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                      + qrlw+++De  lL+G +d+ +++g      ++d+  +y+ v+ +++++++k+qlveK+rrLK+K k   +k  ++ke+ f+++++q ife+s
  Vradi08g13060.1 254 QYQRLWTKQDEKELLKGYLDYIKQHGRtttTLQNDVASLYDHVRPKLNVDFNKNQLVEKLRRLKRKHKLALNK-GTDKEVPFRNPQEQAIFEIS 346
                      579******************9998875545556***************************************.9999**************** PP

           DUF573  93 kkiWg 97 
                      +kiWg
  Vradi08g13060.1 347 NKIWG 351
                      ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.5E-25256351IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MPKFNELKAI GICICICKEF NGNPPPTPNP LPPKPNPMPP LTNSFKTGDT QLLTVSSIKL  60
YFEGGSVVRA LEGEFLAIVD FGEDVAVLLL QPSELLDELV LVETELKLRL DLVVEQSGVV  120
VVRGSSLRRV VQKPLQEPNF VLVRPQALEQ SPRIVKRLFL LDLLRARPLG RGIGDNNSRR  180
RDDDNDQYLS SCDVDETIPV ALAVPSATPA VTVAFPADDE RSTVPGTTAT VTATTFVTRS  240
KGQCSNKYSG IVRQYQRLWT KQDEKELLKG YLDYIKQHGR TTTTLQNDVA SLYDHVRPKL  300
NVDFNKNQLV EKLRRLKRKH KLALNKGTDK EVPFRNPQEQ AIFEISNKIW GNDTDNLLDQ  360
EYLEGDASGR TPESRYLGGI VKVKVDQLDN SDEIDERVPK RLRLDDAEDV NRTNEHNNSG  420
SLQVFIEETM RSCFSPLLKE MLDEVNQEPP PGLVPIPLPL YPEEVDHEQW RKRGILELEV  480
YLKRLELLQD QIKARLEELR SRREVYDKTS PGCAETACAL SNTNNFNE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g13060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511840.10.0probable transcription factor At5g28040
TrEMBLA0A1S3V0K60.0A0A1S3V0K6_VIGRR; probable transcription factor At5g28040
STRINGXP_007144807.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.14e-30DNA-binding storekeeper protein-related transcriptional regulator