PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g16000.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 250aa    MW: 28534.2 Da    PI: 9.333
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g16000.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.44e-30160159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                     ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpvkk+v+r+aed ++++ tYeg+Hnh+
  Vradi08g16000.1  1 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpSCPVKKQVQRCAEDMSILVSTYEGTHNHP 60
                     58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007743.3E-35161IPR003657WRKY domain
SuperFamilySSF1182906.54E-26162IPR003657WRKY domain
PROSITE profilePS5081128.197162IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.0E-29262IPR003657WRKY domain
PfamPF031062.6E-26260IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MNDGCQWRKY GQKIAKGNPC PRAYYRCTVS PSCPVKKQVQ RCAEDMSILV STYEGTHNHP  60
LPTSATTIAY TTSAAASMLQ SPSLTTQPGL VNSDTVPLLS SNNVLYNLNA LNFTSSYHHG  120
LRNSPTIFLN RHTIASIDAC KPSNYVLRAE PQMLQIKQRK KGIRVYQAFH GFMDYQPLGF  180
TYQILSIQLR HRRVSVFDEG HFLVNEVQRQ CYDSWTERRE QPRVRERDND NEEGSREAQR  240
VRRGLETEM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-221621474WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g16000.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-104AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506313.13e-82probable WRKY transcription factor 72
RefseqXP_022633693.12e-84probable WRKY transcription factor 61
TrEMBLA0A1S3UJV27e-81A0A1S3UJV2_VIGRR; probable WRKY transcription factor 72
TrEMBLA0A3Q0EPA56e-83A0A3Q0EPA5_VIGRR; probable WRKY transcription factor 61
STRINGXP_007153834.13e-72(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.14e-39WRKY DNA-binding protein 61