PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g16570.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 248aa    MW: 28824.6 Da    PI: 6.6705
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g16570.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.4e-102361448
                     HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     ++v+ +G g W+  +++ g++R++k+c++rw++yl
  Vradi08g16570.1  2 NYVQVHGEGKWRELSKRAGLKRCGKSCRLRWLNYL 36
                     68*******************************97 PP
2Myb_DNA-binding52.98.7e-174287148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++yl
  Vradi08g16570.1 42 RGNISSDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 87
                     78999*****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.228136IPR017930Myb domain
CDDcd001679.36E-5236No hitNo description
SuperFamilySSF466891.71E-22283IPR009057Homeodomain-like
PfamPF002492.0E-8236IPR001005SANT/Myb domain
SMARTSM007175.3238IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-17243IPR009057Homeodomain-like
PROSITE profilePS5129426.0673791IPR017930Myb domain
SMARTSM007175.4E-164189IPR001005SANT/Myb domain
PfamPF002494.1E-154287IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-254491IPR009057Homeodomain-like
CDDcd001673.58E-114687No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MNYVQVHGEG KWRELSKRAG LKRCGKSCRL RWLNYLKPDI KRGNISSDEE DLIIRLHKLL  60
GNRWSLIAGR LPGRTDNEIK NYWNTYLRKK VEHKHNQNDN IPINLSSKSS LGDVLDPTKS  120
AHPMMIKPKS MRCTKVMMPG NDSVNTMNLI ATTWDHNPSA SMPQDEHNHC LTGVLQDFDI  180
GDFLMSYEDD CRFNGYACVE IPQHIFEDQT WRLDDSMVEA TWYENWKHDA YFSQEQDMDM  240
DMGFSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-2119139128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g16570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511901.10.0transcription factor MYB8
TrEMBLA0A1S3V0N20.0A0A1S3V0N2_VIGRR; transcription factor MYB8
STRINGXP_007143768.11e-155(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15511512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.14e-50MYB family protein