PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g17210.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 427aa    MW: 48617.3 Da    PI: 6.7281
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g17210.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS306.66e-94464241374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lLl+ A+av++++l    + L+ l +++s +gd++qR++ayf+ +Laarl+   s  y+ l  ++t+    +eel+a++ ++ vsP+++f+
  Vradi08g17210.1  46 LIHLLLSTATAVDDNNLDSSLENLTDLYQTVSLTGDSVQRVVAYFADGLAARLLTRKSPFYDMLMEEPTT----EEELNAFTDLYRVSPYYQFA 135
                      689****************************************************9*****999888886....79999*99************ PP

             GRAS  95 hltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnv 180
                      h+taNqaIlea+e+e     +++H+iDfd+s+G+QWp+L+q+L++++  ++  slRiTg+g+    + +el+et++rL +f + +  + fef+ 
  Vradi08g17210.1 136 HFTANQAILEAFEKEeernnRALHVIDFDVSYGFQWPSLIQSLSEKAttGNRISLRITGFGK----NLKELQETESRLVSFSKGFvSLVFEFQG 225
                      *************9988877789***********************9866677*********....99**************985389****** PP

             GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                      l    l   ++ +Lr k++E++aVnlv  l +l     +  + ++++L +v sl+P +vvvveqe +++  sFl rf+++l+y++a+fdsl+  
  Vradi08g17210.1 226 L----LRGSRVINLRKKKNETVAVNLVSYLNTLS----CFMK-ISDTLGFVHSLNPSIVVVVEQEGSRSPRSFLSRFTDSLHYFAAMFDSLDDC 310
                      8....77778899***************999997....3333.578************************************************ PP

             GRAS 275 lpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkv........ksdg...yrveee.s 355
                      lp es er  +E++llg+ei++++ +  +     + e++e+W++r+e+ GF + ++s+k + qaklll++         +++g   +rv e+ +
  Vradi08g17210.1 311 LPLESAERLRIEKKLLGKEIKSMLNNDVDGvDCPKYERMETWKARMENHGFVATKISSKSMIQAKLLLKMRthycplqfEEEGgggFRVSERdE 404
                      *************************98877557899********************************98522222211222233488876645 PP

             GRAS 356 gslv.lgWkdrpLvsvSaWr 374
                      g ++ lgW++r L++vSaW+
  Vradi08g17210.1 405 GRAIsLGWQNRFLLTVSAWQ 424
                      55557**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.61720391IPR005202Transcription factor GRAS
PfamPF035142.1E-9146424IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MSSTTARKSY ESYEGKIFRL LQMREQMLRQ DHRRKGVVED GNGLPLIHLL LSTATAVDDN  60
NLDSSLENLT DLYQTVSLTG DSVQRVVAYF ADGLAARLLT RKSPFYDMLM EEPTTEEELN  120
AFTDLYRVSP YYQFAHFTAN QAILEAFEKE EERNNRALHV IDFDVSYGFQ WPSLIQSLSE  180
KATTGNRISL RITGFGKNLK ELQETESRLV SFSKGFVSLV FEFQGLLRGS RVINLRKKKN  240
ETVAVNLVSY LNTLSCFMKI SDTLGFVHSL NPSIVVVVEQ EGSRSPRSFL SRFTDSLHYF  300
AAMFDSLDDC LPLESAERLR IEKKLLGKEI KSMLNNDVDG VDCPKYERME TWKARMENHG  360
FVATKISSKS MIQAKLLLKM RTHYCPLQFE EEGGGGFRVS ERDEGRAISL GWQNRFLLTV  420
SAWQSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-565442326377Protein SCARECROW
5b3h_D2e-565442326377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g17210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014513268.10.0protein SCARECROW-like
TrEMBLA0A1S3V4J30.0A0A1S3V4J3_VIGRR; protein SCARECROW-like
STRINGXP_007143661.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62002952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-55GRAS family protein