PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g18020.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 243aa    MW: 26327.2 Da    PI: 7.6293
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g18020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-16171219148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEd +l+ +++ +G+g +W + ++++g++R++k+c++rw +yl
  Vradi08g18020.1 171 KGPWSPEEDAKLKAYIEHHGTGgNWIALPQKIGLKRCGKSCRLRWTNYL 219
                      79*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-22162229IPR009057Homeodomain-like
SuperFamilySSF466893.2E-16165229IPR009057Homeodomain-like
PROSITE profilePS5129421.199166223IPR017930Myb domain
SMARTSM007171.3E-12170221IPR001005SANT/Myb domain
PfamPF002494.0E-15171219IPR001005SANT/Myb domain
CDDcd001673.19E-10173219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
DSPSSPTSYP AAARHFVSSP FRTSPAAGGH LCSSSFKPSP AHRASPFITS PAHRTPPSSN  60
PLETSLTRHS PPWSFAVHIA SCPLYANSMA YLPSLVARLA SQSALTETTR RNHENDNASD  120
FVVDGEDGGS GEAVLLVDHV NEVFIDRDGE REAGRADMGR APCCDKANVK KGPWSPEEDA  180
KLKAYIEHHG TGGNWIALPQ KIGLKRCGKS CRLRWTNYLR PNIKHGGFSE EYIQEARGEV  240
HE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g18020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150433e-79AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
GenBankBT0974033e-79BT097403.1 Soybean clone JCVI-FLGm-16K1 unknown mRNA.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.15e-49myb domain protein 84