PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g18570.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 536aa    MW: 59433.2 Da    PI: 5.7138
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g18570.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS280.64.6e-86724102352
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++ L+e+A+a+s+g  e a+++L+rls+++       q  + +++ AL++r+++     ++  pp e+      e++ +++l++e s +++++ 
  Vradi08g18570.1  72 IQSLTEVAKAISEGRVEVATQILTRLSQNS------DQGFVNCMVSALKSRMSH-----VEYPPPVEE--LFGREHTESTQLLFEHSLFFRVAL 152
                      689***********************9975......46689************9.....333333322..3499999***************** PP

             GRAS  96 ltaNqaIlea.vege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      ++aN aIle+ +e++    ++ ++Dfdi++G Q+++Ll++L+ R++g+p  ++i +v +++    e++++ g  L ++Ae+lg+ f+f+v +++
  Vradi08g18570.1 153 MVANIAILESaFENKtenPKLCVVDFDIGNGKQYASLLHELSLRRKGSPaVVKIIAVTENS--ADEKMSSAGVMLGRLAEQLGIGFKFKV-LTR 243
                      ********9615555666899*********************999666659********55..8999***********************.699 PP

             GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                      r+++l+ e+L ++ +E+laVn++++l++++desvs+e++rde+L+ vk+l P+vv++veqe+++n+++F++r++e++ yy alfdsle++++re
  Vradi08g18570.1 244 RIAELTRESLGCDADEVLAVNFAFRLYKMPDESVSTENPRDELLRRVKTLAPRVVTLVEQESNTNTAPFVARVAESCAYYGALFDSLETTMARE 337
                      ********************************************************************************************** PP

             GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                      +++rik+E+  l+r+i n vaceg+er+er+e ++kWr+r+++aGF+  pls+++a+++k  l   +    +ve
  Vradi08g18570.1 338 NSWRIKMEEG-LSRKIANTVACEGRERVERCEVFGKWRARMDMAGFRLKPLSQRVAESIKERLGGENRVTVKVE 410
                      **********.*************************************************99988774445555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.22145412IPR005202Transcription factor GRAS
PfamPF035141.6E-8372410IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MEKNLIDHRL QELEKELLED NDDDQGDAVS VVTTSEWSHT IQNLITPPKH VSSSPSSSTT  60
SSNSSAESIS VIQSLTEVAK AISEGRVEVA TQILTRLSQN SDQGFVNCMV SALKSRMSHV  120
EYPPPVEELF GREHTESTQL LFEHSLFFRV ALMVANIAIL ESAFENKTEN PKLCVVDFDI  180
GNGKQYASLL HELSLRRKGS PAVVKIIAVT ENSADEKMSS AGVMLGRLAE QLGIGFKFKV  240
LTRRIAELTR ESLGCDADEV LAVNFAFRLY KMPDESVSTE NPRDELLRRV KTLAPRVVTL  300
VEQESNTNTA PFVARVAESC AYYGALFDSL ETTMARENSW RIKMEEGLSR KIANTVACEG  360
RERVERCEVF GKWRARMDMA GFRLKPLSQR VAESIKERLG GENRVTVKVE KAVASHEASF  420
SFIFINLKIP NNRVLYQIVP WPPHFLSSAS TSSNSMETVK HLHESGPPPA SKPNLQQTNP  480
KAENPIPVGG FLNPFFRALP SDSQKCNGVK NDDDSSSEVP GAIKENDNIT NFERE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-32683881329GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g18570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510787.10.0scarecrow-like protein 8
SwissprotQ9FYR71e-119SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A1S3UXU70.0A0A1S3UXU7_VIGRR; scarecrow-like protein 8
STRINGXP_007143458.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-107SCARECROW-like 8