PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g18910.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 703aa    MW: 79015.6 Da    PI: 8.834
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g18910.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.11.3e-101579148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.................TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.................kgRtlkqcksrwqkyl 48
                     +g W++eEd +l +++ + G g+W++++ + g                 + R++k+c++rw +yl
  Vradi08g18910.1 15 KGLWSPEEDNKLRNYILKQGHGCWSSVPIKAGwflssflvvtfsgpyhsLQRSGKSCRLRWINYL 79
                     678************************************************************97 PP
2Myb_DNA-binding54.43e-1785130148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+e ++ ++++lG++ W+ I+++++ gRt++++k++w++yl
  Vradi08g18910.1  85 RGKFTKQEEETILTLHHMLGNK-WSQISQHLP-GRTDNEIKNYWHSYL 130
                      89********************.*********.************997 PP
3Myb_DNA-binding60.73.1e-19398445148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+WT+eEd+ lvd++k++G g+W+t +++ g+ R++k+c++rw +yl
  Vradi08g18910.1 398 RGAWTPEEDQALVDYIKEHGHGSWRTLPKHAGLLRCGKSCRLRWINYL 445
                      89******************************99************97 PP
4Myb_DNA-binding52.41.2e-16451496148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE+  +v+++ +lG++ W++Ia+ ++ gRt++++k++w+++l
  Vradi08g18910.1 451 RGPFTSEEESTIVQLHGMLGNR-WAAIASQLP-GRTDNEIKNYWNTHL 496
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.5091079IPR017930Myb domain
SuperFamilySSF466891.44E-2412126IPR009057Homeodomain-like
SMARTSM007172.4E-81481IPR001005SANT/Myb domain
PfamPF002493.3E-101579IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-191686IPR009057Homeodomain-like
CDDcd001671.13E-51879No hitNo description
PROSITE profilePS5129426.66180134IPR017930Myb domain
SMARTSM007171.1E-1684132IPR001005SANT/Myb domain
PfamPF002492.3E-1685130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2587133IPR009057Homeodomain-like
CDDcd001677.44E-1187130No hitNo description
PROSITE patternPS000860232241IPR017972Cytochrome P450, conserved site
Gene3DG3DSA:1.10.10.603.6E-24389448IPR009057Homeodomain-like
PROSITE profilePS5129418.401393445IPR017930Myb domain
SuperFamilySSF466891.5E-30395492IPR009057Homeodomain-like
SMARTSM007176.3E-15397447IPR001005SANT/Myb domain
PfamPF002499.2E-17398445IPR001005SANT/Myb domain
CDDcd001672.87E-11400445No hitNo description
PROSITE profilePS5129425.272446500IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-26449500IPR009057Homeodomain-like
SMARTSM007173.2E-16450498IPR001005SANT/Myb domain
PfamPF002494.5E-15451496IPR001005SANT/Myb domain
CDDcd001671.87E-10453496No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MGCQPLEKGK PKHKKGLWSP EEDNKLRNYI LKQGHGCWSS VPIKAGWFLS SFLVVTFSGP  60
YHSLQRSGKS CRLRWINYLR PGLKRGKFTK QEEETILTLH HMLGNKWSQI SQHLPGRTDN  120
EIKNYWHSYL KKKEAKAKEK GSHNLMKYAS SSSDTMDSSN SLQNLATQGT QSCNFTKEAC  180
QSSLPKLLFA EWLSLDQVNS ANSVDSFGLR NGFDQNSTLQ EAAIHDMSDI PFGGGYHRCL  240
ANISAPEILN SELKYANQMV ENGFILPGVD LMSSNFSMSN DAIMNSHQLE IIKSSVRTKL  300
AHRRAIEVIT RIIIGVHFKA IACGNQNLEL STSTYLKTWR TPYCGFRLRS NRYAYSSFVY  360
LSPCARGNPS LNLPTMVTLT IPSEMGKAPC CEKHGVKRGA WTPEEDQALV DYIKEHGHGS  420
WRTLPKHAGL LRCGKSCRLR WINYLRPGIK RGPFTSEEES TIVQLHGMLG NRWAAIASQL  480
PGRTDNEIKN YWNTHLKKRL LRSCHSLREK QSCLVLDQTI VKSESPSTRH MVQWESVRVE  540
AEARLSMESS LLNSWPKSST CPDHFLHLWH SEVGKSFRMV KGKEGIVSQS PVSHPSSSSK  600
LESCSDVSLQ VKNSTSSLYP CIEDVNMVHE QISSYKPKLD DTAGSDSGNY EFLDTSDSAL  660
KHLLHISDDV GFLGQNDNFL NLLDATCDQD SFFHISSEKG NL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2795001108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g18910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511935.10.0transcription factor MYB41-like
RefseqXP_022641340.10.0transcription factor MYB41-like
SwissprotQ9M2D99e-88MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A1S3V0V50.0A0A1S3V0V5_VIGRR; transcription factor MYB41-like
STRINGXP_007143400.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-84myb domain protein 17