PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g19000.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 313aa    MW: 35043.5 Da    PI: 7.1406
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g19000.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.7e-36241142101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d++++++isw+++g+sf+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll+
  Vradi08g19000.1  24 FLTKTYQLVDDHTIDDVISWNDSGSSFIVWNTTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNECFRRGQKQLLC 108
                      9*****************************************************************99.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i+r+k
  Vradi08g19000.1 109 EIQRRK 114
                      ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-3813108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-5820113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.17E-3421113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.6E-202447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-3224113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-206274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MTPRLEHNSD STSAESQRSI PTPFLTKTYQ LVDDHTIDDV ISWNDSGSSF IVWNTTVFAR  60
DLLPKYFKHN NFSSFVRQLN TYGFRKVVPD RWEFSNECFR RGQKQLLCEI QRRKILSSSP  120
PAGATASVAV PSPLALPAIP IAKPIVSPSN STEEQVISSN SSPSRVPAEL LDENERLKKE  180
NILLMKELEE MRSLCNNILN LMSNYATSRA DGGTEVVKTL GLMPSKRCSG EDAAEGMNPK  240
LFGVAIGTKR AREEGRGEEY DTVLSLHPFH ADVKSEPLDL ERHGENRSTS WLNHCRTANE  300
RECVIDTRRC KS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-261311319129Heat shock factor protein 1
5d5v_B1e-261311319129Heat shock factor protein 1
5d5v_D1e-261311319129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g19000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512458.10.0heat stress transcription factor B-2b
SwissprotQ6Z9C85e-82HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A1S3V2860.0A0A1S3V286_VIGRR; heat stress transcription factor B-2b
STRINGXP_007143381.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.19e-82heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]