PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g20060.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 173aa    MW: 18978.9 Da    PI: 9.519
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g20060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260989.2e-312102196
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++C+l+ ++     p++q++++ +v+k+FG++ ++++l+a+p ++r+++++sl+yeA  r+ +Pv+Gavg+++++++ql+q
  Vradi08g20060.1   2 SCNGCRVLRKGCSENCMLRHCLqlienPQAQAHATLFVAKFFGRAALMSFLSAVPANQRSALFQSLLYEAVGRTINPVNGAVGLLWSGNWQLCQ 95 
                      6********************************************************************************************* PP

           DUF260  90 lkaelal 96 
                      + +e +l
  Vradi08g20060.1  96 MGVEKVL 102
                      9888665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.6071107IPR004883Lateral organ boundaries, LOB
PfamPF031956.7E-27299IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCMLR HCLQLIENPQ AQAHATLFVA KFFGRAALMS FLSAVPANQR  60
SALFQSLLYE AVGRTINPVN GAVGLLWSGN WQLCQMGVEK VLRGGAAFLS SVDVHHQHHV  120
TERVMIAGGT LCHQAKKQRV GTTSQESETF YMGRKPQDSA PQSQRNLLTL FF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g20060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150415e-99AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514255.11e-126LOB domain-containing protein 38 isoform X1
SwissprotQ9SN238e-58LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A1S3V7I91e-125A0A1S3V7I9_VIGRR; LOB domain-containing protein 38 isoform X1
STRINGXP_007143107.11e-109(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.13e-60LOB domain-containing protein 38