PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g20310.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 348aa    MW: 39022.4 Da    PI: 8.171
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g20310.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH110.00081481851254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ ++++ L++l+ +      +K + a++L +A+ YI+ L
  Vradi08g20310.1 148 RKEKLGERIAALQQLVSPF-----GKTDTASVLHEAMGYIRFL 185
                      77788899********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.59E-4128190No hitNo description
PROSITE profilePS5088810.906136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-7147192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-10147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDPKDEFELT GTTFSQLLFG DDLDATTPAL PLPHHHCSYD HHSLSSSPLF SFHKPPKMLC  60
FGDHETIPHI PPTIVTPQKS VITSSDSSSA SSSNYTNTAF TSLPKSTSLQ KKRNGLGQES  120
VTKVGVGGQR QTKKTKAENP TSTGHAKRKE KLGERIAALQ QLVSPFGKTD TASVLHEAMG  180
YIRFLHDQVE VLCSPYLQSL SSSHHEHQHV SPIPYFIILA LFFIVQGNFV TTFGIVDAIA  240
CLENLDDEYD LLELIWRWMG KEVNCRKWQR GITINKSGSK FTHEVQIRDE VKFGRYYRVQ  300
DELGLVIQLI VKFKLRAQTY LKSGILAEMS AAVCNNNYTF LRHDIRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g20310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-142AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511973.11e-151transcription factor bHLH113 isoform X1
TrEMBLA0A1S3V0W11e-149A0A1S3V0W1_VIGRR; transcription factor bHLH113 isoform X1
STRINGXP_007143069.11e-108(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103212129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.15e-27bHLH family protein