PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g20910.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 113aa    MW: 13045.2 Da    PI: 8.8229
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g20910.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH49.85.3e-162853126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     +ktelC+ +++tGtC+yGd C+FaHg
  Vradi08g20910.1 28 FKTELCNKWQETGTCPYGDHCQFAHG 53
                     79***********************8 PP
2zf-CCCH20.67.6e-076690125
                     --S---SGGGGTS.--TTTTT-SS-S CS
          zf-CCCH  1 yktelCrffartG.tCkyGdrCkFaH 25
                     ykte Cr  ++ G  C+yG rC+F H
  Vradi08g20910.1 66 YKTEVCRMVLA-GvVCPYGHRCHFRH 90
                     9**********.66**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.2E-202360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-122459IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.0042755IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-92754IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-132853IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-126194IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-96195IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-46592IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8036593IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MVQQKVYVRG GQKEEEPLEM VVYNQGMFKT ELCNKWQETG TCPYGDHCQF AHGIGELRPV  60
IRHPRYKTEV CRMVLAGVVC PYGHRCHFRH ALTEQEKAVV SQPKPRTMKL ER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-222894470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g20910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-174AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413212.15e-80PREDICTED: zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F54e-55C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A0S3SM081e-78A0A0S3SM08_PHAAN; Uncharacterized protein
STRINGXP_007142975.13e-77(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-57C3H family protein