PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g21240.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 222aa    MW: 24882.9 Da    PI: 4.7889
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g21240.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.8e-108322046
                     TTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqk 46
                     G + W++Ia++++ gRt++++k++w++
  Vradi08g21240.1  8 GDR-WSKIAQHLP-GRTDNEIKNYWRT 32
                     555.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.786138IPR017930Myb domain
SuperFamilySSF466893.12E-8437IPR009057Homeodomain-like
PfamPF002493.1E-8832IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-12833IPR009057Homeodomain-like
CDDcd001674.73E-8932No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MLLLLFIGDR WSKIAQHLPG RTDNEIKNYW RTRVQKQARQ LNIESGSKRF IDAVKCFWMP  60
RLLQKMEQNN SPSPHCSMTS MVNLGNSGEA SMSSTSSSFN IPSMLSSSPP QREFIMDGAN  120
HLGTMSNPIN PSPDSFPYSQ LLGISEHPKS PPNVLENNVY SYPNQDNCYA DTNNYGMEGL  180
NMDPLSAMGT YDFPQFDFQS AGNGWMLDSV EDTTLWNMDA M*
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g21240.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512719.11e-158transcription factor MYB62
SwissprotQ9C9G74e-31MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A1S3V3J61e-157A0A1S3V3J6_VIGRR; transcription factor MYB62
STRINGXP_007142925.11e-142(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.15e-33myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]