PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g21970.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 486aa    MW: 55633.1 Da    PI: 5.5564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g21970.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-13325369655
                      HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       ++Er+RR+++N+++ +Lr+l+P  +      Kl+ a+iL  A+eY+k+Lq
  Vradi08g21970.1 325 LMAERKRRKKLNDRLYKLRSLVPRiS------KLDRASILGDAIEYVKDLQ 369
                      589*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.0E-189154IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000837.84E-14318371No hitNo description
PROSITE profilePS5088816.075319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-16321376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-11324369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-15325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-15325373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.719385457IPR002912ACT domain
CDDcd048739.65E-4386449No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MNIIMQNLVE RLRSLVGLNG WDYCIYWKLS EDERFLEWLG CCCGGTESNK NAGEEHLFPV  60
SSCRDTTYPH PRTKPCDLLS QLSTSIPIDN SGIHTQTLLT NQPSWVNYSN SLDSSLLDET  120
MGTQVLISAP GGLIELFVTK QVAEDHQVID FVTSQCIEAV NHSMSFNIDV NSMSNMQQNP  180
LLGDENEGNN SRNTHFHPSE HVMSMDHRIG LCSSPLNFMQ QFNYNQLNRM KSDTFSEEYR  240
GSFLHEKQTN PEHEHENTYQ KSLMTTDSQY MESLEAKEKQ EEEKELLKHV VARSDSMSDC  300
SEQNEEEEDG KYRRRNGKGN QSKNLMAERK RRKKLNDRLY KLRSLVPRIS KLDRASILGD  360
AIEYVKDLQK QPQVEVALID GNEYFVKVFC EHRPGGFVKL MESLNTIGMD VVHATVTSHK  420
GLVSNVFEVE KKDNETVEAE DVRESLLELT RNRYRGWSHE VTPTSENAVG RDQHQISSFS  480
HHFHA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312333RRRNGKGNQSKNLMAERKRRKK
2327334ERKRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g21970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020211030.10.0transcription factor ABORTED MICROSPORES isoform X2
RefseqXP_029126671.10.0transcription factor ABORTED MICROSPORES isoform X2
TrEMBLA0A0L9U1V80.0A0A0L9U1V8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SLL30.0A0A0S3SLL3_PHAAN; Uncharacterized protein
STRINGGLYMA10G42830.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.19e-85bHLH family protein